tckconvert¶
Synopsis¶
tckconvert [ options ] input output
- input: the input track file.
- output: the output track file.
Description¶
Convert between different track file formats.
The program currently supports MRtrix .tck files (input/output), ascii text files (input/output), and VTK polydata files (output only).
Note that ascii files will be stored with one streamline per numbered file. To support this, the command will use the multi-file numbering syntax, where square brackets denote the position of the numbering for the files, for example:
$ tckconvert input.tck output-[].txt
will produce files named output-0000.txt, output-0001.txt, output-0002.txt, ...
Options¶
- -scanner2voxel reference if specified, the properties of this image will be used to convert track point positions from real (scanner) coordinates into voxel coordinates.
- -scanner2image reference if specified, the properties of this image will be used to convert track point positions from real (scanner) coordinates into image coordinates (in mm).
- -voxel2scanner reference if specified, the properties of this image will be used to convert track point positions from voxel coordinates into real (scanner) coordinates.
- -image2scanner reference if specified, the properties of this image will be used to convert track point positions from image coordinates (in mm) into real (scanner) coordinates.
Standard options¶
- -info display information messages.
- -quiet do not display information messages or progress status.
- -debug display debugging messages.
- -force force overwrite of output files. Caution: Using the same file as input and output might cause unexpected behaviour.
- -nthreads number use this number of threads in multi-threaded applications (set to 0 to disable multi-threading)
- -failonwarn terminate program if a warning is produced
- -help display this information page and exit.
- -version display version information and exit.
Author: Daan Christiaens (daan.christiaens@gmail.com), J-Donald Tournier (jdtournier@gmail.com), Philip Broser (philip.broser@me.com).
Copyright: Copyright (c) 2008-2016 the MRtrix3 contributors
This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/
MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
For more details, see www.mrtrix.org