fixelreorient¶

Synopsis¶

fixelreorient [ options ]  input warp output

input: the input fixel image.
warp: a 4D deformation field used to perform reorientation. Reorientation is performed by applying the Jacobian affine transform in each voxel in the warp, then re-normalising the vector representing the fixel direction
output: the output fixel image.

Description¶

Reorient fixel directions using the local affine transformation (Jacobian matrix) of an input warp.

Options¶

Standard options¶

-info display information messages.
-quiet do not display information messages or progress status.
-debug display debugging messages.
-force force overwrite of output files. Caution: Using the same file as input and output might cause unexpected behaviour.
-nthreads number use this number of threads in multi-threaded applications (set to 0 to disable multi-threading)
-failonwarn terminate program if a warning is produced
-help display this information page and exit.
-version display version information and exit.

Author: David Raffelt (david.raffelt@florey.edu.au)

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see www.mrtrix.org