dwi2response dhollander

Synopsis

dwi2response dhollander [ options ] input out_sfwm out_gm out_csf
  • input: The input DWI
  • out_sfwm: Output single-fibre WM response text file
  • out_gm: Output GM response text file
  • out_csf: Output CSF response text file

Description

Unsupervised estimation of WM, GM and CSF response functions. Does not require a T1 image (or segmentation thereof).

Options

Options specific to the ‘dhollander’ algorithm

  • -erode Number of erosion passes to apply to initial (whole brain) mask. (default: 3)
  • -fa FA threshold for crude WM versus GM-CSF separation. (default: 0.2)
  • -sfwm Number of single-fibre WM voxels to select, as a percentage of refined WM. (default: 0.5 per cent)
  • -gm Number of GM voxels to select, as a percentage of refined GM. (default: 2 per cent)
  • -csf Number of CSF voxels to select, as a percentage of refined CSF. (default: 10 per cent)

Options common to all dwi2response algorithms

  • -shell The b-value shell(s) to use in response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -lmax The maximum harmonic degree(s) of response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -mask Provide an initial mask for response voxel selection
  • -voxels Output an image showing the final voxel selection(s)
  • -grad Pass the diffusion gradient table in MRtrix format
  • -fslgrad bvecs bvals Pass the diffusion gradient table in FSL bvecs/bvals format

Standard options

  • -continue <TempDir> <LastFile> Continue the script from a previous execution; must provide the temporary directory path, and the name of the last successfully-generated file
  • -force Force overwrite of output files if pre-existing
  • -help Display help information for the script
  • -nocleanup Do not delete temporary files during script, or temporary directory at script completion
  • -nthreads number Use this number of threads in MRtrix multi-threaded applications (0 disables multi-threading)
  • -tempdir /path/to/tmp/ Manually specify the path in which to generate the temporary directory
  • -quiet Suppress all console output during script execution
  • -verbose Display additional information for every command invoked

References

  • If using ‘dhollander’ algorithm: Dhollander, T.; Raffelt, D. & Connelly, A. Unsupervised 3-tissue response function estimation from single-shell or multi-shell diffusion MR data without a co-registered T1 image. ISMRM Workshop on Breaking the Barriers of Diffusion MRI, 2016, 5
  • If using ‘fa’ algorithm: Tournier, J.-D.; Calamante, F.; Gadian, D. G. & Connelly, A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage, 2004, 23, 1176-1185
  • If using ‘msmt_csd’ algorithm: Jeurissen, B.; Tournier, J.-D.; Dhollander, T.; Connelly, A. & Sijbers, J. Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data. NeuroImage, 2014, 103, 411-426
  • If using ‘tax’ algorithm: Tax, C. M.; Jeurissen, B.; Vos, S. B.; Viergever, M. A. & Leemans, A. Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data. NeuroImage, 2014, 86, 67-80
  • If using ‘tournier’ algorithm: Tournier, J.-D.; Calamante, F. & Connelly, A. Determination of the appropriate b value and number of gradient directions for high-angular-resolution diffusion-weighted imaging. NMR Biomedicine, 2013, 26, 1775-1786

Author: Robert E. Smith (robert.smith@florey.edu.au) and Thijs Dhollander (thijs.dhollander@gmail.com)

Copyright: Copyright (c) 2008-2016 the MRtrix3 contributors

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see www.mrtrix.org

dwi2response fa

Synopsis

dwi2response fa [ options ] input output
  • input: The input DWI
  • output: The output response function text file

Description

Use the old FA-threshold heuristic for single-fibre voxel selection and response function estimation

Options

Options specific to the ‘fa’ algorithm

  • -erode Number of brain mask erosion steps to apply prior to threshold (not used if mask is provided manually)
  • -number The number of highest-FA voxels to use
  • -threshold Apply a hard FA threshold, rather than selecting the top voxels

Options common to all dwi2response algorithms

  • -shell The b-value shell(s) to use in response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -lmax The maximum harmonic degree(s) of response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -mask Provide an initial mask for response voxel selection
  • -voxels Output an image showing the final voxel selection(s)
  • -grad Pass the diffusion gradient table in MRtrix format
  • -fslgrad bvecs bvals Pass the diffusion gradient table in FSL bvecs/bvals format

Standard options

  • -continue <TempDir> <LastFile> Continue the script from a previous execution; must provide the temporary directory path, and the name of the last successfully-generated file
  • -force Force overwrite of output files if pre-existing
  • -help Display help information for the script
  • -nocleanup Do not delete temporary files during script, or temporary directory at script completion
  • -nthreads number Use this number of threads in MRtrix multi-threaded applications (0 disables multi-threading)
  • -tempdir /path/to/tmp/ Manually specify the path in which to generate the temporary directory
  • -quiet Suppress all console output during script execution
  • -verbose Display additional information for every command invoked

References

  • If using ‘dhollander’ algorithm: Dhollander, T.; Raffelt, D. & Connelly, A. Unsupervised 3-tissue response function estimation from single-shell or multi-shell diffusion MR data without a co-registered T1 image. ISMRM Workshop on Breaking the Barriers of Diffusion MRI, 2016, 5
  • If using ‘fa’ algorithm: Tournier, J.-D.; Calamante, F.; Gadian, D. G. & Connelly, A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage, 2004, 23, 1176-1185
  • If using ‘msmt_csd’ algorithm: Jeurissen, B.; Tournier, J.-D.; Dhollander, T.; Connelly, A. & Sijbers, J. Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data. NeuroImage, 2014, 103, 411-426
  • If using ‘tax’ algorithm: Tax, C. M.; Jeurissen, B.; Vos, S. B.; Viergever, M. A. & Leemans, A. Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data. NeuroImage, 2014, 86, 67-80
  • If using ‘tournier’ algorithm: Tournier, J.-D.; Calamante, F. & Connelly, A. Determination of the appropriate b value and number of gradient directions for high-angular-resolution diffusion-weighted imaging. NMR Biomedicine, 2013, 26, 1775-1786

Author: Robert E. Smith (robert.smith@florey.edu.au) and Thijs Dhollander (thijs.dhollander@gmail.com)

Copyright: Copyright (c) 2008-2016 the MRtrix3 contributors

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see www.mrtrix.org

dwi2response manual

Synopsis

dwi2response manual [ options ] input in_voxels output
  • input: The input DWI
  • in_voxels: Input voxel selection mask
  • output: Output response function text file

Description

Derive a response function using an input mask image alone (i.e. pre-selected voxels)

Options

Options specific to the ‘manual’ algorithm

  • -dirs Manually provide the fibre direction in each voxel (a tensor fit will be used otherwise)

Options common to all dwi2response algorithms

  • -shell The b-value shell(s) to use in response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -lmax The maximum harmonic degree(s) of response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -mask Provide an initial mask for response voxel selection
  • -voxels Output an image showing the final voxel selection(s)
  • -grad Pass the diffusion gradient table in MRtrix format
  • -fslgrad bvecs bvals Pass the diffusion gradient table in FSL bvecs/bvals format

Standard options

  • -continue <TempDir> <LastFile> Continue the script from a previous execution; must provide the temporary directory path, and the name of the last successfully-generated file
  • -force Force overwrite of output files if pre-existing
  • -help Display help information for the script
  • -nocleanup Do not delete temporary files during script, or temporary directory at script completion
  • -nthreads number Use this number of threads in MRtrix multi-threaded applications (0 disables multi-threading)
  • -tempdir /path/to/tmp/ Manually specify the path in which to generate the temporary directory
  • -quiet Suppress all console output during script execution
  • -verbose Display additional information for every command invoked

References

  • If using ‘dhollander’ algorithm: Dhollander, T.; Raffelt, D. & Connelly, A. Unsupervised 3-tissue response function estimation from single-shell or multi-shell diffusion MR data without a co-registered T1 image. ISMRM Workshop on Breaking the Barriers of Diffusion MRI, 2016, 5
  • If using ‘fa’ algorithm: Tournier, J.-D.; Calamante, F.; Gadian, D. G. & Connelly, A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage, 2004, 23, 1176-1185
  • If using ‘msmt_csd’ algorithm: Jeurissen, B.; Tournier, J.-D.; Dhollander, T.; Connelly, A. & Sijbers, J. Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data. NeuroImage, 2014, 103, 411-426
  • If using ‘tax’ algorithm: Tax, C. M.; Jeurissen, B.; Vos, S. B.; Viergever, M. A. & Leemans, A. Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data. NeuroImage, 2014, 86, 67-80
  • If using ‘tournier’ algorithm: Tournier, J.-D.; Calamante, F. & Connelly, A. Determination of the appropriate b value and number of gradient directions for high-angular-resolution diffusion-weighted imaging. NMR Biomedicine, 2013, 26, 1775-1786

Author: Robert E. Smith (robert.smith@florey.edu.au) and Thijs Dhollander (thijs.dhollander@gmail.com)

Copyright: Copyright (c) 2008-2016 the MRtrix3 contributors

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see www.mrtrix.org

dwi2response msmt_5tt

Synopsis

dwi2response msmt_5tt [ options ] input in_5tt out_wm out_gm out_csf
  • input: The input DWI
  • in_5tt: Input co-registered 5TT image
  • out_wm: Output WM response text file
  • out_gm: Output GM response text file
  • out_csf: Output CSF response text file

Description

Derive MSMT-CSD tissue response functions based on a co-registered five-tissue-type (5TT) image

Options

Options specific to the ‘msmt_5tt’ algorithm

  • -dirs Manually provide the fibre direction in each voxel (a tensor fit will be used otherwise)
  • -fa Upper fractional anisotropy threshold for GM and CSF voxel selection
  • -pvf Partial volume fraction threshold for tissue voxel selection
  • -wm_algo algorithm dwi2response algorithm to use for WM single-fibre voxel selection

Options common to all dwi2response algorithms

  • -shell The b-value shell(s) to use in response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -lmax The maximum harmonic degree(s) of response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -mask Provide an initial mask for response voxel selection
  • -voxels Output an image showing the final voxel selection(s)
  • -grad Pass the diffusion gradient table in MRtrix format
  • -fslgrad bvecs bvals Pass the diffusion gradient table in FSL bvecs/bvals format

Standard options

  • -continue <TempDir> <LastFile> Continue the script from a previous execution; must provide the temporary directory path, and the name of the last successfully-generated file
  • -force Force overwrite of output files if pre-existing
  • -help Display help information for the script
  • -nocleanup Do not delete temporary files during script, or temporary directory at script completion
  • -nthreads number Use this number of threads in MRtrix multi-threaded applications (0 disables multi-threading)
  • -tempdir /path/to/tmp/ Manually specify the path in which to generate the temporary directory
  • -quiet Suppress all console output during script execution
  • -verbose Display additional information for every command invoked

References

  • If using ‘dhollander’ algorithm: Dhollander, T.; Raffelt, D. & Connelly, A. Unsupervised 3-tissue response function estimation from single-shell or multi-shell diffusion MR data without a co-registered T1 image. ISMRM Workshop on Breaking the Barriers of Diffusion MRI, 2016, 5
  • If using ‘fa’ algorithm: Tournier, J.-D.; Calamante, F.; Gadian, D. G. & Connelly, A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage, 2004, 23, 1176-1185
  • If using ‘msmt_csd’ algorithm: Jeurissen, B.; Tournier, J.-D.; Dhollander, T.; Connelly, A. & Sijbers, J. Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data. NeuroImage, 2014, 103, 411-426
  • If using ‘tax’ algorithm: Tax, C. M.; Jeurissen, B.; Vos, S. B.; Viergever, M. A. & Leemans, A. Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data. NeuroImage, 2014, 86, 67-80
  • If using ‘tournier’ algorithm: Tournier, J.-D.; Calamante, F. & Connelly, A. Determination of the appropriate b value and number of gradient directions for high-angular-resolution diffusion-weighted imaging. NMR Biomedicine, 2013, 26, 1775-1786

Author: Robert E. Smith (robert.smith@florey.edu.au) and Thijs Dhollander (thijs.dhollander@gmail.com)

Copyright: Copyright (c) 2008-2016 the MRtrix3 contributors

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see www.mrtrix.org

dwi2response tax

Synopsis

dwi2response tax [ options ] input output
  • input: The input DWI
  • output: The output response function text file

Description

Use the Tax et al. (2014) recursive calibration algorithm for single-fibre voxel selection and response function estimation

Options

Options specific to the ‘tax’ algorithm

  • -peak_ratio Second-to-first-peak amplitude ratio threshold
  • -max_iters Maximum number of iterations
  • -convergence Percentile change in any RF coefficient required to continue iterating

Options common to all dwi2response algorithms

  • -shell The b-value shell(s) to use in response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -lmax The maximum harmonic degree(s) of response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -mask Provide an initial mask for response voxel selection
  • -voxels Output an image showing the final voxel selection(s)
  • -grad Pass the diffusion gradient table in MRtrix format
  • -fslgrad bvecs bvals Pass the diffusion gradient table in FSL bvecs/bvals format

Standard options

  • -continue <TempDir> <LastFile> Continue the script from a previous execution; must provide the temporary directory path, and the name of the last successfully-generated file
  • -force Force overwrite of output files if pre-existing
  • -help Display help information for the script
  • -nocleanup Do not delete temporary files during script, or temporary directory at script completion
  • -nthreads number Use this number of threads in MRtrix multi-threaded applications (0 disables multi-threading)
  • -tempdir /path/to/tmp/ Manually specify the path in which to generate the temporary directory
  • -quiet Suppress all console output during script execution
  • -verbose Display additional information for every command invoked

References

  • If using ‘dhollander’ algorithm: Dhollander, T.; Raffelt, D. & Connelly, A. Unsupervised 3-tissue response function estimation from single-shell or multi-shell diffusion MR data without a co-registered T1 image. ISMRM Workshop on Breaking the Barriers of Diffusion MRI, 2016, 5
  • If using ‘fa’ algorithm: Tournier, J.-D.; Calamante, F.; Gadian, D. G. & Connelly, A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage, 2004, 23, 1176-1185
  • If using ‘msmt_csd’ algorithm: Jeurissen, B.; Tournier, J.-D.; Dhollander, T.; Connelly, A. & Sijbers, J. Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data. NeuroImage, 2014, 103, 411-426
  • If using ‘tax’ algorithm: Tax, C. M.; Jeurissen, B.; Vos, S. B.; Viergever, M. A. & Leemans, A. Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data. NeuroImage, 2014, 86, 67-80
  • If using ‘tournier’ algorithm: Tournier, J.-D.; Calamante, F. & Connelly, A. Determination of the appropriate b value and number of gradient directions for high-angular-resolution diffusion-weighted imaging. NMR Biomedicine, 2013, 26, 1775-1786

Author: Robert E. Smith (robert.smith@florey.edu.au) and Thijs Dhollander (thijs.dhollander@gmail.com)

Copyright: Copyright (c) 2008-2016 the MRtrix3 contributors

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see www.mrtrix.org

dwi2response tournier

Synopsis

dwi2response tournier [ options ] input output
  • input: The input DWI
  • output: The output response function text file

Description

Use the Tournier et al. (2013) iterative algorithm for single-fibre voxel selection and response function estimation

Options

Options specific to the ‘tournier’ algorithm

  • -iter_voxels Number of single-fibre voxels to select when preparing for the next iteration
  • -sf_voxels Number of single-fibre voxels to use when calculating response function
  • -dilate Number of mask dilation steps to apply when deriving voxel mask to test in the next iteration
  • -max_iters Maximum number of iterations

Options common to all dwi2response algorithms

  • -shell The b-value shell(s) to use in response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -lmax The maximum harmonic degree(s) of response function estimation (single value for single-shell response, comma-separated list for multi-shell response)
  • -mask Provide an initial mask for response voxel selection
  • -voxels Output an image showing the final voxel selection(s)
  • -grad Pass the diffusion gradient table in MRtrix format
  • -fslgrad bvecs bvals Pass the diffusion gradient table in FSL bvecs/bvals format

Standard options

  • -continue <TempDir> <LastFile> Continue the script from a previous execution; must provide the temporary directory path, and the name of the last successfully-generated file
  • -force Force overwrite of output files if pre-existing
  • -help Display help information for the script
  • -nocleanup Do not delete temporary files during script, or temporary directory at script completion
  • -nthreads number Use this number of threads in MRtrix multi-threaded applications (0 disables multi-threading)
  • -tempdir /path/to/tmp/ Manually specify the path in which to generate the temporary directory
  • -quiet Suppress all console output during script execution
  • -verbose Display additional information for every command invoked

References

  • If using ‘dhollander’ algorithm: Dhollander, T.; Raffelt, D. & Connelly, A. Unsupervised 3-tissue response function estimation from single-shell or multi-shell diffusion MR data without a co-registered T1 image. ISMRM Workshop on Breaking the Barriers of Diffusion MRI, 2016, 5
  • If using ‘fa’ algorithm: Tournier, J.-D.; Calamante, F.; Gadian, D. G. & Connelly, A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage, 2004, 23, 1176-1185
  • If using ‘msmt_csd’ algorithm: Jeurissen, B.; Tournier, J.-D.; Dhollander, T.; Connelly, A. & Sijbers, J. Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data. NeuroImage, 2014, 103, 411-426
  • If using ‘tax’ algorithm: Tax, C. M.; Jeurissen, B.; Vos, S. B.; Viergever, M. A. & Leemans, A. Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data. NeuroImage, 2014, 86, 67-80
  • If using ‘tournier’ algorithm: Tournier, J.-D.; Calamante, F. & Connelly, A. Determination of the appropriate b value and number of gradient directions for high-angular-resolution diffusion-weighted imaging. NMR Biomedicine, 2013, 26, 1775-1786

Author: Robert E. Smith (robert.smith@florey.edu.au) and Thijs Dhollander (thijs.dhollander@gmail.com)

Copyright: Copyright (c) 2008-2016 the MRtrix3 contributors

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see www.mrtrix.org

dwi2response

Synopsis

dwi2response [ options ] algorithm ...
  • algorithm: Select the algorithm to be used to derive the response function; additional details and options become available once an algorithm is nominated. Options are: dhollander, fa, manual, msmt_5tt, tax, tournier

Description

Estimate response function(s) for spherical deconvolution

Options

Standard options

  • -continue <TempDir> <LastFile> Continue the script from a previous execution; must provide the temporary directory path, and the name of the last successfully-generated file
  • -force Force overwrite of output files if pre-existing
  • -help Display help information for the script
  • -nocleanup Do not delete temporary files during script, or temporary directory at script completion
  • -nthreads number Use this number of threads in MRtrix multi-threaded applications (0 disables multi-threading)
  • -tempdir /path/to/tmp/ Manually specify the path in which to generate the temporary directory
  • -quiet Suppress all console output during script execution
  • -verbose Display additional information for every command invoked

References

  • If using ‘dhollander’ algorithm: Dhollander, T.; Raffelt, D. & Connelly, A. Unsupervised 3-tissue response function estimation from single-shell or multi-shell diffusion MR data without a co-registered T1 image. ISMRM Workshop on Breaking the Barriers of Diffusion MRI, 2016, 5
  • If using ‘fa’ algorithm: Tournier, J.-D.; Calamante, F.; Gadian, D. G. & Connelly, A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage, 2004, 23, 1176-1185
  • If using ‘msmt_csd’ algorithm: Jeurissen, B.; Tournier, J.-D.; Dhollander, T.; Connelly, A. & Sijbers, J. Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data. NeuroImage, 2014, 103, 411-426
  • If using ‘tax’ algorithm: Tax, C. M.; Jeurissen, B.; Vos, S. B.; Viergever, M. A. & Leemans, A. Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data. NeuroImage, 2014, 86, 67-80
  • If using ‘tournier’ algorithm: Tournier, J.-D.; Calamante, F. & Connelly, A. Determination of the appropriate b value and number of gradient directions for high-angular-resolution diffusion-weighted imaging. NMR Biomedicine, 2013, 26, 1775-1786

Author: Robert E. Smith (robert.smith@florey.edu.au) and Thijs Dhollander (thijs.dhollander@gmail.com)

Copyright: Copyright (c) 2008-2016 the MRtrix3 contributors

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see www.mrtrix.org